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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "rabhit" in publications use:'
type: software
license: CC-BY-SA-4.0
title: 'rabhit: Inference Tool for Antibody Haplotype'
version: 0.4.0
doi: 10.1038/s41467-019-08489-3
identifiers:
- type: doi
  value: 10.32614/CRAN.package.rabhit
abstract: 'Infers V-D-J haplotypes and gene deletions from AIRR-seq data for Ig and
  TR chains, based on J, D, or V genes as anchor, by adapting a Bayesian framework.
  It also calculates a Bayes factor, a number that indicates the certainty level of
  the inference, for each haplotyped gene. Citation: Gidoni, et al (2019) <https://doi.org/10.1038/s41467-019-08489-3>.
  Peres and Gidoni, et al (2019) <https://doi.org/10.1093/bioinformatics/btz481>.'
authors:
- family-names: Peres
  given-names: Ayelet
  email: ayelet.peres@yale.edu
- family-names: Gidoni
  given-names: Moriah
  email: moriah.cohen@biu.ac.il
- family-names: Yaari
  given-names: Gur
  email: gur.yaari@biu.ac.il
preferred-citation:
  type: article
  title: Mosaic deletion patterns of the human antibody heavy chain gene locus shown
    by Bayesian haplotyping
  authors:
  - family-names: Gidoni
    given-names: Moriah
    email: moriah.cohen@biu.ac.il
  - family-names: Snir
    given-names: Omri
  - family-names: Peres
    given-names: Ayelet
    email: ayelet.peres@yale.edu
  - family-names: Polak
    given-names: Pazit
  - family-names: Lindeman
    given-names: Ida
  - family-names: Mikocziova
    given-names: Ivana
  - family-names: Sarna
    given-names: Vikas Kumar
  - family-names: Lundin
    given-names: Knut E. A.
  - family-names: Clouser
    given-names: Christopher
  - family-names: Vigneault
    given-names: Francois
  - family-names: Yaari
    given-names: Gur
    email: gur.yaari@biu.ac.il
  journal: Nature Communications
  year: '2019'
  volume: '10'
  issue: '1'
  doi: 10.1038/s41467-019-08489-3
  start: '628'
repository: https://ayeletperes.r-universe.dev
repository-code: https://github.com/ayeletperes/rabhit
commit: fe09e29b30c49dff152dc3e7e8e428b3ab30d0ff
url: https://ayeletperes.github.io/rabhit/
date-released: '2026-06-19'
contact:
- family-names: Peres
  given-names: Ayelet
  email: ayelet.peres@yale.edu
references:
- type: article
  title: 'RAbHIT: R Antibody Haplotype Inference Tool'
  authors:
  - family-names: Peres
    given-names: Ayelet
  - family-names: Gidoni
    given-names: Moriah
  - family-names: Polak
    given-names: Pazit
  - family-names: Yaari
    given-names: Gur
  journal: Bioinformatics
  year: '2019'
  volume: '35'
  issue: '22'
  doi: 10.1093/bioinformatics/btz481
  start: '4840'
  end: '4842'