{ "_id": "6ab38ff23d719c1f840913b9", "Package": "rabhit", "Type": "Package", "Title": "Inference Tool for Antibody Haplotype", "Version": "0.4.0", "Authors@R": "c(person(\"Ayelet\", \"Peres\", role=c(\"aut\",\"cre\"), \nemail=\"ayelet.peres@yale.edu\"),\nperson(\"Moriah\", \"Gidoni\", role=c(\"aut\"),\nemail=\"moriah.cohen@biu.ac.il\"),\nperson(\"Gur\", \"Yaari\", role=c(\"aut\",\"cph\"),\nemail=\"gur.yaari@biu.ac.il\"))", "Description": "Infers V-D-J haplotypes and gene deletions from AIRR-seq\ndata for Ig and TR chains, based on J, D, or V genes as anchor,\nby adapting a Bayesian framework. It also calculates a Bayes\nfactor, a number that indicates the certainty level of the\ninference, for each haplotyped gene. Citation: Gidoni, et al\n(2019) . Peres and Gidoni, et\nal (2019) .", "License": "CC BY-SA 4.0", "URL": "https://github.com/ayeletperes/rabhit,\nhttps://ayeletperes.github.io/rabhit/", "BugReports": "https://github.com/ayeletperes/rabhit/issues", "LazyData": "true", "BuildVignettes": "true", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "NeedsCompilation": "no", "Config/testthat/edition": "3", "Collate": "'Data.R' 'rabhit.R' 'asc_support.R' 'internal_functions.R'\n'functions.R' 'graphic_functions.R' 'zzz.R'", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://ayeletperes.r-universe.dev", "Date/Publication": "2026-06-19 17:36:41 UTC", "RemoteUrl": "https://github.com/ayeletperes/rabhit", "RemoteRef": "HEAD", "RemoteSha": "fe09e29b30c49dff152dc3e7e8e428b3ab30d0ff", "Packaged": { "Date": "2026-09-23 08:33:30 UTC", "User": "root" }, "Author": "Ayelet Peres [aut, cre],\nMoriah Gidoni [aut],\nGur Yaari [aut, cph]", "Maintainer": "Ayelet Peres ", "_user": "ayeletperes", "_type": "src", "_file": "rabhit_0.4.0.tar.gz", "_fileid": "https://r2.ropensci.org/1caa1b49889ea168cb5d9e638640fbd88cd40b6f75b430eba5bd31bb2b0625e5", "_filesize": 3111932, "_sha256": "1caa1b49889ea168cb5d9e638640fbd88cd40b6f75b430eba5bd31bb2b0625e5", "_expires": "2027-01-01T08:38:08.000Z", "_created": "2026-09-23T08:33:30.000Z", "_published": "2026-09-23T08:38:10.729Z", "_jobs": [ { "job": 107105470143, "time": 235, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10740076441" }, { "job": 107105470175, "time": 220, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10739903646" }, { "job": 107105470321, "time": 112, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10739873498" }, { "job": 107105470284, "time": 170, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "10739528703" }, { "job": 107103957914, "time": 286, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10740001157" }, { "job": 107105470193, "time": 170, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "10739199859" }, { "job": 107105470340, "time": 161, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10739269472" }, { "job": 107105470224, "time": 166, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "10740385221" }, { "job": 107105470380, "time": 149, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10739184891" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/ayeletperes/actions/runs/35837350312", "_status": "success", "_upstream": "https://github.com/ayeletperes/rabhit", "_commit": { "id": "fe09e29b30c49dff152dc3e7e8e428b3ab30d0ff", "author": "ayelet peres ", "committer": "ayelet peres ", "message": "Refactor graphic functions: dedup, perf, sizing, color constants\n\n- Centralize recurring structural colors (deletion/NA/non-reliable/legend-key)\n into named constants in internal_functions.R.\n- Add width/height parameters to plotHaplotype's multi-subject pdf output\n (previously hardcoded 15x20 inches).\n- Vectorize the per-row row-expansion in hapHeatmap (was an O(n^2)\n do.call(rbind, lapply(...)); ~2500x faster on large cohorts, identical output).\n- De-duplicate deletionHeatmap's static/plotly branches behind shared\n del_heatmap_theme()/del_count_theme() helpers and shared fill-color vectors.\n\nOutput verified unchanged: 5 static plots bit-identical, the jittered plot\nwithin tolerance, and both interactive (plotly) widgets byte-identical by digest.\nAdds a reusable visual regression harness under data-raw/ (build-ignored).\n", "time": 1781890601 }, "_maintainer": { "name": "Ayelet Peres", "email": "ayelet.peres@yale.edu", "login": "ayeletperes", "description": "Computational biologist @ Yale. 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